OSSI Proposals

View proposals for past and current OSSI projects.

An open-source platform for single-molecule localization

Srini Turaga, Jakob Macke, Jonas Ries

Funded projects:
An open-source platform for single-molecule localization
WarpSpeed to accessible registration

John Bogovic, Larissa Heinrich, and Stephan Saalfeld

Funded projects:
BigWarp
Maintenance and enhancement of Funke lab's automated reconstruction pipeline for volumetric Electron Microscopy

Samia Mohinta, Albert Cardona

Funded projects:
Catena
EASI-FISH pipeline

MultiFISH Project Team

Funded projects:
EASI-FISH Pipeline
janeliaHortaCloud

MouseLight Project Team

Funded projects:
HortaCloud
User friendly deployment of JVM based tools

Caleb Hulbert, John Bogovic and Stephan Saalfeld

Funded projects:
Java packaging tool chain
Kilosort

Marius Pachitariu

Funded projects:
Kilosort
Cell videos from high-level descriptions

Philip Hubbard

Funded projects:
neuVid
Open Science Software Portfolio

Tiago Ferreira and Konrad Rokicki

Funded projects:
OSSI Website
Paintera

Caleb Hulbert, John Bogovic and Stephan Saalfeld

Funded projects:
Paintera
Peta-scale lightsheet microscopy reconstruction and maintenance of existing software

Stephan Preibisch, Stephan Saalfeld

Funded projects:
BigStitcher-Spark BigStitcher Stitching-Spark
Tools for spatial transcriptomics

Marwan Zouinkhi, Stephan Preibisch

Funded projects:
RS-FISH Spatial Transcriptomics as Images Project (STIM)
Suite2p and Cellpose

Carsen Stringer

Funded projects:
Cellpose Suite2p
An adaptable and extensible library for annotation of video

Kristin Branson, Mayank Kabra, Iljung Kwak

Funded projects:
Video Annotation Library
VVD Viewer

Takashi Kawase, Hideo Otsuna, Stephan Preibisch, Konrad Rokicki

Funded projects:
VVDViewer